MAD:Database where you access/retrieve or submit to our database of compounds
MAD:Molecule Builder where you coarse grain all atom PDB structure into their Martini versions
MAD:System Builder which combines your coarse grained protein structure with lipid component from MAD
database to create large system
MAD:Polymer Editor where you design or transform molecules. Powered by polyply.
MAD:API Download molecules in different formats.
A registration is required in order to use the MAD:Molecule Builder, MAD:Polymer Editor and
the
MAD:System Builder
Account access and registration are available
here
References
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SJ Marrink, HJ Risselada, S Yefimov, DP Tieleman, AH De Vries. The MARTINI force field: coarse grained
model
for biomolecular simulations. J Phys Chem B (2007) 111, 7812-7824. Doi: 10.1021/jp071097f
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L Monticelli, SK Kandasamy, X Periole, RG Larson, DP Tieleman, SJ Marrink. The MARTINI coarse-grained
force
field: extension to proteins. J Chem Theory Comput (2008) 4, 819-834. Doi: 10.1021/ct700324x
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Souza, P.C.T., Alessandri, R., Barnoud, J. et al. Martini 3: a general-purpose force field for
coarse-grained
molecular dynamics. Nat Methods (2021) 18, 382–388. Doi : 10.1038/s41592-021-01098-3